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Autore

NADIA PISANTI

Unimap Dati autore

• Ricercatore Universitario presso Dipartimento di Informatica
• Membro della Facolta' di Scienze Matematiche Fisiche e Naturali
• Settore scientifico disciplinare INF/01 INFORMATICA
• In servizio

Prodotti

• lista concisa
• lista espansa
• tipo
• anno

• Articolo in rivista

  1. Pisanti N.,DNA computing: a survey, Bulletin of EATCS,vol. 64,pp 188-216,tot.pag 29,1998
  2. Pisanti N., Sagot M.-F.,Further thoughts on the syntenic distance between genomes, ALGORITHMICA,vol. 34,num. 2,pp 157-180,tot.pag 24,2002
  3. Pisanti N., Marangoni R., Ferragina P., Frangioni A., Savona A., Pisanelli C., Luccio F.,PeTre: A Method for Paralogy Trees Construction, JOURNAL OF COMPUTATIONAL BIOLOGY,vol. 10,num. 5,pp 791-802,tot.pag 12,2003
  4. V. Ciriani, N. Pisanti, A. Bernasconi.,Room Allocation: a Polynomial Subcase of the Quadratic Assignment Problem., DISCRETE APPLIED MATHEMATICS,vol. 144,num. 3,pp 263-269,tot.pag 7,2004
  5. C.S.Iliopoulos, J.McHugh, P.Peterlongo, N.Pisanti, W.Rytter, M.Sagot,A first approach to finding common motifs with gaps, International Journal of Foundations of Computer Science,vol. 16,num. 6,pp 1145-1155,tot.pag 11,2005
  6. N.Pisanti, M.Crochemore, R.Grossi, M.-F.Sagot,Bases of Motifs for Generating Repeated Patterns with Wild Cards, IEEE/ACM Transactions on Computational Biology and Bioinformatics,vol. 2,num. 1,pp 40-50,tot.pag 11,2005
  7. Peterlongo Pierre, PISANTI NADIA, Boyer Frederic, Pereira do lago Alair, Sagot Marie-france,Lossless filter for multiple repetitions with Hamming Distance, JOURNAL OF DISCRETE ALGORITHMS,vol. 6(3),pp 497,tot.pag 509,tot. autori 5,2008
  8. PISANTI NADIA, Soldano Henry, Carpentier Mathilde, Pothier Joel,A Relational Extension of the Notion of Motifs: Application to the Protein Common 3D Substructures Searching Problem, JOURNAL OF COMPUTATIONAL BIOLOGY: A JOURNAL OF COMPUTATIONAL MOLECULAR CELL BIOLOGY,pp 1635,tot.pag 1660,tot. autori 4,2009
  9. Federico Maria, PISANTI NADIA,Suffix Tree Characterization of Maximal Motifs in Biological Sequences, THEORETICAL COMPUTER SCIENCE,vol. 410/43,pp 4391,tot.pag 4410,2009
  10. Peterlongo Pierre, Akio tominaga sacomoto Gustavo, Pereira do lago Alair, PISANTI NADIA, Sagot Marie-france,Lossless Filter for Multiple Repeats with Bounded Edit Distancee, BMC ALGORITHMS FOR MOLECULAR BIOLOGY,vol. 4(3),pp 1,tot.pag 20,2009
  11. BATTAGLIA GIOVANNI, GROSSI ROBERTO, CANGELOSI DAVIDE, PISANTI NADIA,Masking Patterns in Sequences: A New Class of Motif Discovery with Don't Cares, THEORETICAL COMPUTER SCIENCE,vol. 410/43,pp 4327,tot.pag 4340,2009
  12. GROSSI ROBERTO, Pietracaprina Andrea, PISANTI NADIA, Pucci Geppino, Upfal Eli, Vandin Fabio,MADMX: A Strategy for Maximal Dense Motif Extraction, JOURNAL OF COMPUTATIONAL BIOLOGY,pp 1,tot.pag 20,2010
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  Capitolo, parte o articolo in libro

  1. Pisanti N.,Bioinformatica in Lo stato vivente della materia,pp 195, 216, UTET,tot.pag. 22,2000
  2. Pisanti N., Crochemore M., Grossi R., Sagot M.-F.,A Comparative Study of Bases for Motif Inference in String Algorithmics,pp 195, 226, King's College London Publications,tot.pag. 32,2004
  3. Pisanti N, Sagot M.-F.,Inference of Network Expressions in Applied combinatorics on words,pp 241, 267,tot. autori 2,tot.pag. 27,2005
  4. Pisanti N., Soldano H., Carpentier M., Pothier J.,Implicit and Explicit Representation of Approximated Motifs in Algorithms in Bioinformatics,pp 1, 14, King's College London Publications,tot.pag. 14,2006
  5. PISANTI NADIA, Giraud Mathieu, Peterlongo Pierre,Filters and Seeds Approaches for Fast Homology Searches in Large Datasets in Filters and Seeds Approaches for Fast Homology Searches in Large Datasets,pp 301, 321,2010
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  Atti di convegno nazionale con revisori articolo su invito

  1. Marangoni R., Pisanelli C., Pisanti N., Ferragina P., Frangioni A., Luccio F.,Genomic information and biological evolution: some results on genes families, XVI Congresso Societa, pp 1-1, Trento,vol. unico,2002
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  Atti di convegni nazionale con revisori articolo breve / poster

  1. MARANGONI ROBERTO, La terza A., PISANTI NADIA, Barchetta S., Miceli C.,Searching for structured motifs in the upstream regions of hsp70 genes in Tetrahymena termophila, BITS 2 - Bioinformatics ITalian Society meeting, pp 1-1, Milano,2005
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  Atto di convegno internazionale con revisori articolo su invito

  1. PISANTI NADIA,DNA computing: a new computational paradigm using molecules, International Conference of the Italian Society of Logic and Phylosophy of Science, pp 101-116, tot. autori 1,1999
  2. Luccio F., Brunetti S., Ciriani V., Lodi E., Pisanti N.,Locally free substitutions are not so free: an open problem in sequence alignment, FUN with Algorithms (FUN), pp 5-6, Isola d,vol. 1,2004
  3. PISANTI NADIA, Soldano Henri,Protein Structures and Relational Motifs with a Degenerate Alphabet, Second Stringology 2005 Research Workshop of the Israeli Science Foundation, pp 15-21,2005
  4. PISANTI NADIA,Filtering for long multiple repetitions with substitutions and indels, Third Haifa Annual International Stringology Research Workshop, pp 16-17,2006
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  Atto di convegno internazionale con revisori articolo in extenso

  1. Ciriani V., Pisanti N., Bernasconi A.,Efficient Optimal Greedy Algorithms for Room Allocation, FUN with Algorithms (FUN), pp 43-60, Isola d,vol. 1,2001
  2. Pisanti N., Crochemore M., Grossi R., Sagot M.-F.,A Basis of Tiling Motifs for Generating Repeated Patterns and its Complexity for Higher Quorum, Mathematical Foundations of Computer Science (MFCS), pp 622-632, Bratislava (Slovakia),vol. LNCS 2747,2003
  3. Iliopoulos C.S., McHugh J., Peterlongo P., Pisanti N., Rytter W., Sagot M.-F.,A First Approach to Finding Common Motifs with Gaps, Prague Stringology Conference (PSC), pp 88-97, Prague (Czech Republic),vol. 1,2004
  4. Peterlongo Pierre, PISANTI NADIA, Boyer Frederic, Sagot Marie-france,Filtre exact de sélection de longues répétitions approchées utilisant le tableau des bi-facteurs, MATHStic Algorithmique Génomique, pp 22-23, Orsay,2005
  5. Pisanti N., Soldano H., Carpentier M.,Incremental Inference of Relational Motifs with a Degenerate Alphabet, Combinatorial Pattern Matching (CPM), pp 229-240, Jeju Island (South Korea),vol. LNCS 3537,2005
  6. Peterlongo P., Pisanti N., Boyer F., Sagot M.-F.,Lossless Filter for Finding Long Multiple Approximate Repetitions Using a New Data Structure, the Bi-Factor Array, String Processing and Information REtrieval (SPIRE), pp 179-190, Buenos Aires (Argentina),vol. LNCS 3772,2005
  7. Pisanti N., Carvalho A., Marsan L., Sagot M.-F.,RISOTTO: Fast extraction of motifs with mismatches, Latin American Theoretical INformatics (LATIN), pp 757-768, Valdivia (Chile),vol. LNCS 3887,2006
  8. Federico Maria, PISANTI NADIA,Suffix Tree Characterization of Maximal Motifs in Biological Sequences, BIRD, pp 456-465, Vienna,vol. 13, tot. autori 2,2008
  9. BATTAGLIA GIOVANNI, GROSSI ROBERTO, MARANGONI ROBERTO, PISANTI NADIA,Mining Biological Sequences with Masks, BIOKDD, pp 193-197, Vienna, tot. autori 4,2009
  10. GROSSI ROBERTO, Pietracaprina Andrea, PISANTI NADIA, Pucci Geppino, Upfal Eli, Vandin Fabio,MADMX: A Novel Strategy for Maximal Dense Motif Extraction, WABI: workshop on Algorithms on BioInformatics, pp 362-374, Philadelphia (USA), tot. autori 6,2009
  11. Peterlongo Pierre, Schnel Nicolas, PISANTI NADIA, Sagot Marie-france, Lacroix Vincent,Identifying SNPs without a reference genome by comparing raw reads, String Processing and Information Retrieval, pp 147-158, Los Cabos (Mexico),vol. 6393,2010
  12. Federico Maria, Peterlongo Pierre, PISANTI NADIA, Sagot Marie-france,Finding Long and Multiple repetitions with Edit Distance, 10th Prague Stringology Conference, pp 83-97, Praga,2010
  13. Federico Maria, PISANTI NADIA,Removing artifacts of approximated motifs, Information Technology in Bio- and Medical Informatics (ITBAM 2011), pp 1-14, Tolosa (Francia), tot. autori 2,2010
  14. Federico Maria, PISANTI NADIA, Peterlongo Pierre,An optimized filter for finding multiple repeats in DNA sequences, 8th ACS/IEEE International Conference on Computer Systems and Applications (AICCSA), pp 77-84,2010
  15. BATTAGLIA GIOVANNI, GROSSI ROBERTO, PISANTI NADIA, MARANGONI ROBERTO, Menconi Giulia,Inferring Mobile Elements in S. cerevisiae strains, International Conference on Bioinformatics Models, Methods and Algorithms, pp 1-8,2010
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  Atto di convegno internazionale con revisori articolo breve / poster

  1. Pisanti N., Viari A.,On studying duplications in genomes by using random graphs, ACM Conference on Research in Computational Molecular Biology (RECOMB), pp 83-83, Lyon (France),vol. 1,1999
  2. Marangoni Roberto, Savona Antonio, Ferragina Paolo, PISANTI NADIA, Pagli Linda, Luccio Fabrizio,A method for paralogy trees construction, German Conference Bioinformatics, pp 1-1,2000
  3. Marangoni Roberto, PISANTI NADIA, Ferragina Paolo, Frangioni Antonio, Luccio Fabrizio,Trying to recontruct the history of genes families, First European Conference on Computational Biology, pp 1-1,2002
  4. La terza A., Marangoni Roberto, PISANTI NADIA, Barchetta S., Miceli C.,Bioinformatics tools to identify structured motifs in the upstream regions of stress-response-involved genes in Tetrahymena thermophila, International Workshop on NETwork Tools and Applications in Biology, pp 1-1,2004
  5. Carpentier Mathilde, PISANTI NADIA, Pothier Joel, Soldano Henri,Application of relational motifs to multiple structural alignment, Journées Ouvertes Biologie Informatique Mathématiques, pp 62-63,2006
  6. Peterlongo Pierre, PISANTI NADIA, Pereira do lago Alair, Sagot Marie-france,Ed'Nimbus: a Lossless Filter for Long Multiple Repetitions with Edit Distance, Journées Ouvertes Biologie Informatique Mathématiques, pp 12-13,2006
  7. GROSSI ROBERTO, Menconi Giulia, PISANTI NADIA, Sagot Marie-france,Structured motifs: don't mind the gap, Workshop on Algorithmic Analysis of Biological Data, pp ?-?+1,2010
  8. Federico Maria, Peterlongo Pierre, PISANTI NADIA, Sagot Marie-france,Long repetitions inference with indels, Workshop on Algorithmic Analysis of Biological Data, pp ?-?+1,2010
  9. Menconi Giulia, BATTAGLIA GIOVANNI, PISANTI NADIA, GROSSI ROBERTO, MARANGONI ROBERTO,Towards mobilome inference in yeast genomes, Bioinformatics Italian Sociaety (BITS) meeting, pp 1-1,2010
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  Rapporto interno e/o relazione

  1. Pisanti N.,A Survey on DNA computing, Universita' di Pisa,1997
  2. Pisanti N., Marangoni R., Ferragina P., Frangioni A., Luccio F., Savona A.,PaTre: a method for Paralogy Trees Construction, Universita' di Pisa,2001
  3. Pisanti N., Sagot M.-F.,Further thoughts on syntenic distances among genomes, Universita' di Pisa,2001
  4. Pisanti N., Crochemore M., Grossi R., Sagot M.-F.,A basis for repeated motifs in pattern discovery and text mining, Institut Gaspard Monge University of Marne-la-Valleée,2002
  5. Pisanti N., Crochemore M., Grossi R., Sagot M.-F.,Bases of Motifs for Generating Repeated Patterns with Don't Cares, Universita' di Pisa,2003
  6. Pisanti N., Soldano H., Carpentier M., Pothier J.,Implicit and Explicit Representation of Approximated Motifs, Universita' di Pisa,2005
  7. Peterlongo Pierre, PISANTI NADIA, Pereira do lago Alair, Sagot Marie-france,Lossless Filter for Long Multiple Repetitions with Edit Distance, Dipartimento di Informatica,tot. autori 4,2006
  8. PISANTI NADIA, Soldano Henry, Carpentier Mathilde, Pothier Joel,Inference of Approximated Motifs with Conserved Relations, Dipartimento di Informatica,tot. autori 4,2006
  9. BATTAGLIA GIOVANNI, Cangelosi Davide, Grossi Roberto, PISANTI NADIA,Masking Patterns in Sequences: a New Class of Motif Discovery with Don't Cares, Dipartimento di Informatica,tot. autori 4,2008
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  Rapporto finale di ricerca pubblicato

  1. PISANTI NADIA,Recent duplications in genomes: a graph theory approach, Universita' di Parigi 6,1998
  2. Pisanti N.,Segment-based distances and similarities in genomic sequences, Universita' di Pisa,2002
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  Curatele di libri collettanei o di Atti di convegno

  1. Khuri Sami, Lhotska Lenka, PISANTI NADIA,Information Technology in Bio- and Medical Informatics, Springer, 238,2010
  2. Böhm Christian, Khuri Sami, Lhotska Lenka, PISANTI NADIA,Proceedings of Information Technology in Bio- and Medical Informatics, 185,2011
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  Software

  1. Peterlongo Pierre, PISANTI NADIA,Ed'Nimbus,categoria ,2006
  2. BATTAGLIA GIOVANNI, GROSSI ROBERTO, PISANTI NADIA, CANGELOSI DAVIDE,MaskMiner: mining biological sequences with masks,Sito di distribuzione http://www.di.unipi.it/~gbattag/maskMiner,categoria ,2008
  3. Orbini michelucci Michele, PISANTI NADIA,EdNimbus2,categoria ,2008
  4. GROSSI ROBERTO, Pietracaprina Andrea, PISANTI NADIA, Pucci Geppino, Upfal Eli, Vandin Fabio,MaDMX: Finding Dense Maximal Motifs,Sito di distribuzione http://www.dei.unipd.it/wdyn/?IDsezione6376,categoria ,2008
  5. Peterlongo Pierre, Akio tominaga sacomoto Gustavo, Pereira do lago Alair, PISANTI NADIA, Sagot Marie-france,Tuiuiu: un filtro per la ricerca di lunghe ripetizioni multiple con edit distance,Sito di distribuzione vedi note,categoria ,2009
  6. BATTAGLIA GIOVANNI, GROSSI ROBERTO, Menconi Giulia, PISANTI NADIA, MARANGONI ROBERTO,REGENDER,Sito di distribuzione http://code.google.com/p/regender/,categoria ,2010
  7. Federico Maria, PISANTI NADIA,FilmRed,categoria ,2010
  8. Peterlongo Pierre, PISANTI NADIA, Sagot Marie-france, Lacroix Vincent,KisSNP,Sito di distribuzione http://alcovna.genouest.org/kissnp-page/,categoria ,2010